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Nxpe3 neurexophilin and PC-esterase domain family, member 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 681096, updated on 5-Mar-2024

Summary

Official Symbol
Nxpe3provided by RGD
Official Full Name
neurexophilin and PC-esterase domain family, member 3provided by RGD
Primary source
RGD:1584648
See related
Ensembl:ENSRNOG00000001608 AllianceGenome:RGD:1584648
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam55c
Summary
Orthologous to human NXPE3 (neurexophilin and PC-esterase domain family member 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 91.3), Brain (RPKM 70.1) and 8 other tissues See more
Orthologs
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Genomic context

See Nxpe3 in Genome Data Viewer
Location:
11q12
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (58195951..58246739)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (44726905..44777694)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (47188332..47238372)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L24 Neighboring gene uncharacterized LOC134481067 Neighboring gene centrosomal protein 97 Neighboring gene adaptor related protein complex 3 subunit sigma 1, pseudogene 1 Neighboring gene NFKB inhibitor zeta Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
NXPE family member 3
Names
family with sequence similarity 55, member C
protein FAM55C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109435.1NP_001102905.1  NXPE family member 3

    See identical proteins and their annotated locations for NP_001102905.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473967
    UniProtKB/TrEMBL
    A6IQR4, D4ACA1
    Related
    ENSRNOP00000002188.3, ENSRNOT00000002188.6
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin; Neurexophilin

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    58195951..58246739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006248252.5XP_006248314.1  NXPE family member 3 isoform X1

    See identical proteins and their annotated locations for XP_006248314.1

    UniProtKB/TrEMBL
    A6IQR4, D4ACA1
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin; Neurexophilin
  2. XM_039088623.2XP_038944551.1  NXPE family member 3 isoform X4

    Conserved Domains (1) summary
    pfam06312
    Location:75275
    Neurexophilin
  3. XM_006248253.5XP_006248315.1  NXPE family member 3 isoform X1

    See identical proteins and their annotated locations for XP_006248315.1

    UniProtKB/TrEMBL
    A6IQR4, D4ACA1
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin; Neurexophilin
  4. XM_039088621.2XP_038944549.1  NXPE family member 3 isoform X2

    UniProtKB/TrEMBL
    A0A0G2JYZ2
    Related
    ENSRNOP00000070847.1
    Conserved Domains (1) summary
    pfam06312
    Location:59268
    Neurexophilin
  5. XM_063270764.1XP_063126834.1  NXPE family member 3 isoform X3