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Pilrb1l1 paired immunoglobin-like type 2 receptor beta 1 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 681182, updated on 29-Feb-2024

Summary

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Official Symbol
Pilrb1l1provided by RGD
Official Full Name
paired immunoglobin-like type 2 receptor beta 1 like 1provided by RGD
Primary source
RGD:1583509
See related
AllianceGenome:RGD:1583509
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable MHC class I protein binding activity. Predicted to be integral component of membrane. Orthologous to human PILRA (paired immunoglobin like type 2 receptor alpha) and PILRB (paired immunoglobin like type 2 receptor beta). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 43.3), Spleen (RPKM 43.3) and 5 other tissues See more
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Genomic context

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Location:
12q12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (23746457..23755065)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (18081410..18089619)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (21502701..21510636, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 2 receptor, pseudogene 107 Neighboring gene vomeronasal 2, receptor 116 like, pseudogene 11 Neighboring gene paired immunoglobulin-like type 2 receptor beta Neighboring gene uncharacterized LOC134481330

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables MHC class I protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
paired immunoglobulin-like type 2 receptor beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    23746457..23755065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039090009.2 → XP_038945937.2  paired immunoglobulin-like type 2 receptor beta

  2. XM_039090008.2 → XP_038945936.2  paired immunoglobulin-like type 2 receptor beta

  3. XM_039090010.2 → XP_038945938.1  paired immunoglobulin-like type 2 receptor beta

    UniProtKB/TrEMBL
    A0A8I6AN38
    Conserved Domains (2) summary
    cd00096
    Location:63 → 68
    Ig; Ig strand C [structural motif]
    cl11960
    Location:32 → 144
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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