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Fam163b family with sequence similarity 163, member B [ Rattus norvegicus (Norway rat) ]

Gene ID: 685169, updated on 3-Apr-2024

Summary

Official Symbol
Fam163bprovided by RGD
Official Full Name
family with sequence similarity 163, member Bprovided by RGD
Primary source
RGD:1597714
See related
Ensembl:ENSRNOG00000065438 AllianceGenome:RGD:1597714
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Orthologous to human FAM163B (family with sequence similarity 163 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 68.3), Heart (RPKM 9.3) and 2 other tissues See more
Orthologs
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Genomic context

Location:
3p12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (30834145..30865802, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (10437383..10466458, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (5656400..5693273, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene myomaker, myoblast fusion factor Neighboring gene ADAMTS-like 2 Neighboring gene uncharacterized LOC134486349 Neighboring gene dopamine beta-hydroxylase

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109458.1NP_001102928.1  protein FAM163B

    See identical proteins and their annotated locations for NP_001102928.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474001
    UniProtKB/TrEMBL
    A6JTK5, D3Z988
    Related
    ENSRNOP00000079918.1, ENSRNOT00000111342.1
    Conserved Domains (1) summary
    pfam15069
    Location:1166
    FAM163; FAM163 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    30834145..30865802 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063284556.1XP_063140626.1  protein FAM163B isoform X1

    UniProtKB/TrEMBL
    A6JTK5, D3Z988