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Pabir3 PABIR family member 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685701, updated on 3-Apr-2024

Summary

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Symbol
Pabir3provided by RGD
Full Name
PABIR family member 3provided by RGD
Primary source
RGD:1590266
See related
Ensembl:ENSRNOG00000028011 AllianceGenome:RGD:1590266
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam122c
Summary
Predicted to enable protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in negative regulation of catalytic activity. Orthologous to human PABIR3 (PABIR family member 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 33.5) See more
Orthologs
human mouse all
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Genomic context

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Location:
Xq36
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (137939690..138003322)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (133020162..133083801)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (157786558..157848875, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene placenta enriched 1 Neighboring gene PABIR family member 2 Neighboring gene motile sperm domain containing 1 Neighboring gene small nuclear ribonucleoprotein polypeptide E, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein serine/threonine phosphatase inhibitor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mitotic G2/M transition checkpoint IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
PABIR family member 1; PABIR family member 3
Names
family with sequence similarity 122, member C
family with sequence similarity 122C
protein FAM122A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    137939690..138003322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100142.2 → XP_038956070.1  PABIR family member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I6GGQ1

  2. XM_008773644.3 → XP_008771866.1  PABIR family member 1 isoform X1

    See identical proteins and their annotated locations for XP_008771866.1

    UniProtKB/TrEMBL
    A0A8I5ZYL0, A0A8I6GGQ1
    Related
    ENSRNOP00000083072.1, ENSRNOT00000109893.1

  3. XM_006257651.4 → XP_006257713.1  PABIR family member 1 isoform X2

    See identical proteins and their annotated locations for XP_006257713.1

    UniProtKB/TrEMBL
    A0A8I6GGQ1, D3ZNP4
    Related
    ENSRNOP00000034281.6, ENSRNOT00000035398.6

  4. XM_063280539.1 → XP_063136609.1  PABIR family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZYL0

  5. XM_063280540.1 → XP_063136610.1  PABIR family member 1 isoform X3

  6. XM_039100141.2 → XP_038956069.1  PABIR family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZYL0, A0A8I6GGQ1

RNA

  1. XR_005498084.1 RNA Sequence

  2. XR_005498083.1 RNA Sequence

  3. XR_005498085.1 RNA Sequence

  4. XR_001842827.2 RNA Sequence

    Related
    ENSRNOT00000118738.1

  5. XR_001842829.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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