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Cnbd1 cyclic nucleotide binding domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 689462, updated on 5-Mar-2024

Summary

Official Symbol
Cnbd1provided by RGD
Official Full Name
cyclic nucleotide binding domain containing 1provided by RGD
Primary source
RGD:1592300
See related
Ensembl:ENSRNOG00000056330 AllianceGenome:RGD:1592300
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human CNBD1 (cyclic nucleotide binding domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 62.1) See more
Orthologs
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Genomic context

See Cnbd1 in Genome Data Viewer
Location:
5q13
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (37030954..37403996, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (32234003..32606765, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (32590282..32956176, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene transfer RNA proline (anticodon AGG) 53 Neighboring gene uncharacterized LOC134478940 Neighboring gene ORMDL sphingolipid biosynthesis regulator 1, pseudogene 2 Neighboring gene cyclic nucleotide gated channel subunit beta 3 Neighboring gene high mobility group protein B1-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
cyclic nucleotide binding domain containing 1; cyclic nucleotide-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    37030954..37403996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063261275.1XP_063117345.1  cyclic nucleotide-binding domain-containing protein 1 isoform X8

  2. XM_063261273.1XP_063117343.1  cyclic nucleotide-binding domain-containing protein 1 isoform X2

  3. XM_039110956.2XP_038966884.1  cyclic nucleotide-binding domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A0G2K3B6
    Conserved Domains (1) summary
    cd00038
    Location:254358
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
  4. XM_063261274.1XP_063117344.1  cyclic nucleotide-binding domain-containing protein 1 isoform X5

  5. XM_039110952.2XP_038966880.1  cyclic nucleotide-binding domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A0G2K3B6
    Conserved Domains (1) summary
    cd00038
    Location:306410
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
  6. XM_063261272.1XP_063117342.1  cyclic nucleotide-binding domain-containing protein 1 isoform X1

  7. XM_039110954.2XP_038966882.1  cyclic nucleotide-binding domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A0G2K3B6
    Conserved Domains (1) summary
    cd00038
    Location:275379
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
  8. XM_017593701.3XP_017449190.1  cyclic nucleotide-binding domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A0G2K3B6

RNA

  1. XR_010051716.1 RNA Sequence

  2. XR_010051715.1 RNA Sequence

  3. XR_010051717.1 RNA Sequence

  4. XR_010051718.1 RNA Sequence