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Ctag2l1 cancer/testis antigen 2 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 690348, updated on 29-Feb-2024

Summary

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Official Symbol
Ctag2l1provided by RGD
Official Full Name
cancer/testis antigen 2 like 1provided by RGD
Primary source
RGD:1597340
See related
Ensembl:ENSRNOG00000060839 AllianceGenome:RGD:1597340
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human CTAG1A (cancer/testis antigen 1A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 8.3) and Thymus (RPKM 0.5) See more
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Genomic context

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Location:
Xq37
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (157737042..157738532)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (152266680..152267835, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (156227459..156230351)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene EKC/KEOPS complex subunit LAGE3-like Neighboring gene olfactory receptor 10K1-like Neighboring gene dyskerin pseudouridine synthase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
EKC/KEOPS complex subunit LAGE3-like
Names
Ctag2 like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    157737042..157738532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001074179.6 → XP_001074179.2  EKC/KEOPS complex subunit LAGE3-like

    See identical proteins and their annotated locations for XP_001074179.2

    UniProtKB/TrEMBL
    A0A0G2K6Q0
    Related
    ENSRNOP00000073897.1
    Conserved Domains (1) summary
    pfam09341
    Location:118 → 190
    Pcc1; Transcription factor Pcc1
Nucleotide Protein Strain
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