Ankrd40 ankyrin repeat domain 40 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ankrd40provided by RGD
Official Full Name: ankyrin repeat domain 40provided by RGD
Primary source: RGD:1594678
See related: Ensembl:ENSRNOG00000002935 AllianceGenome:RGD:1594678
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Orthologous to human ANKRD40 (ankyrin repeat domain 40). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Muscle (RPKM 378.0), Heart (RPKM 285.5) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 10q26

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (79778966..79792212)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (79282075..79295322)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (82032656..82045937)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH134605 (e-PCR)
- UniSTS:217885

RH127438 (e-PCR)
- UniSTS:210748

RH136718 (e-PCR)
- UniSTS:218807

General protein information

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Preferred Names: ankyrin repeat domain-containing protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001134699.1 → NP_001128171.1 ankyrin repeat domain-containing protein 40

See identical proteins and their annotated locations for NP_001128171.1

Status: PROVISIONAL

Source sequence(s)

BC166790

UniProtKB/TrEMBL

A0A8I6AWD6, A0A9K3Y7U6, B2RYI5, E9PTM3

Related

ENSRNOP00000062992.2, ENSRNOT00000067751.3

Conserved Domains (4) summary

cd00204
Location:14 → 93

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

pfam12796
Location:48 → 93

Ank_2; Ankyrin repeats (3 copies)

pfam13637
Location:14 → 64

Ank_4; Ankyrin repeats (many copies)

sd00045
Location:14 → 40

ANK; ANK repeat [structural motif]