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H3f4 H3.4 histone, cluster member [ Rattus norvegicus (Norway rat) ]

Gene ID: 691496, updated on 13-Apr-2024

Summary

Official Symbol
H3f4provided by RGD
Official Full Name
H3.4 histone, cluster memberprovided by RGD
Primary source
RGD:1583877
See related
AllianceGenome:RGD:1583877
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Hist3h3
Summary
Predicted to be involved in nucleosome assembly. Predicted to be part of nucleosome. Orthologous to human H3-4 (H3.4 histone). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See H3f4 in Genome Data Viewer
Location:
10q22
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (44240282..44240842)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (43740702..43741262)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (45304696..45305106)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene H2B.U histone 1 Neighboring gene H2A clustered histone 25 Neighboring gene tripartite motif-containing 17 Neighboring gene uncharacterized LOC102555997 Neighboring gene tripartite motif-containing 11

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Potential readthrough

Included gene: Trim17

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in nucleosome assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
part_of nucleosome ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
H3.4 histone
Names
histone cluster 3, H3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109642.2NP_001103112.1  H3.4 histone

    See identical proteins and their annotated locations for NP_001103112.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A6HEW6
    Conserved Domains (1) summary
    PTZ00018
    Location:1136
    PTZ00018; histone H3; Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    44240282..44240842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)