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PHATRDRAFT_22974 acetate-coa, ligase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7195436, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_22974
Gene description
acetate-coa, ligase
Locus tag
PHATRDRAFT_22974
Gene type
protein coding
RNA name
acetate-coa, ligase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 20
Exon count:
2
Sequence:
Chromosome: 20; NC_011688.1 (523578..525972, complement)

Chromosome 20 - NC_011688.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011688.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AMP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables acetate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process from acetate IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
acetate-coa, ligase
XP_002183764.1
  • Probable Acetate-CoA ligase ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA Also acts on propanoate and propenoate. Involved in Glycolysis / Gluconeogenesis, Pyruvate metabolism, Propanoate metabolism and Reductive carboxylate cycle (CO2 fixation)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011688.1 Reference assembly

    Range
    523578..525972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002183728.1 → XP_002183764.1  acetate-coa, ligase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002183764.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G9F0
    Conserved Domains (2) summary
    cd05966
    Location:39 → 657
    ACS; Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)
    TIGR02188
    Location:30 → 667
    Ac_CoA_lig_AcsA; acetate--CoA ligase
Nucleotide Protein
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