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GltX ferredoxin-dependent glutamate synthase, fusion of large and small subunits [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7195755, updated on 21-Dec-2023

Summary

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Gene symbol
GltX
Gene description
ferredoxin-dependent glutamate synthase, fusion of large and small subunits
Locus tag
PHATRDRAFT_51214
Gene type
protein coding
RNA name
ferredoxin-dependent glutamate synthase, fusion of large and small subunits
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 22
Exon count:
3
Sequence:
Chromosome: 22; NC_011690.1 (576726..581795, complement)

Chromosome 22 - NC_011690.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011690.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutamate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutamate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ferredoxin-dependent glutamate synthase, fusion of large and small subunits
XP_002184279.1
  • involved in synthesis of glutamate; contrary to the Thaps homologue, this one seems to lack N terminal presequences for chloroplast targeting

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011690.1 Reference assembly

    Range
    576726..581795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002184243.1 → XP_002184279.1  ferredoxin-dependent glutamate synthase, fusion of large and small subunits [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002184279.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7GAZ5
    Conserved Domains (5) summary
    PRK11750
    Location:68 → 1573
    gltB; glutamate synthase subunit alpha; Provisional
    cd00982
    Location:1323 → 1574
    gltB_C; gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the ...
    cd02808
    Location:903 → 1265
    GltS_FMN; Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast ...
    pfam04898
    Location:537 → 838
    Glu_syn_central; Glutamate synthase central domain
    cl00319
    Location:82 → 508
    Gn_AT_II; Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to ...
Nucleotide Protein
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