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PHATRDRAFT_15917 cystathionine gamma-lyase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7195850, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_15917
Gene description
cystathionine gamma-lyase
Locus tag
PHATRDRAFT_15917
Gene type
protein coding
RNA name
cystathionine gamma-lyase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 22
Exon count:
3
Sequence:
Chromosome: 22; NC_011690.1 (488824..490171, complement)

Chromosome 22 - NC_011690.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene L-galactono-1,4-lactone dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011690.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cystathionine gamma-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cysteine biosynthetic process via cystathionine IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transsulfuration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
cystathionine gamma-lyase
XP_002184260.1
  • A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes; Gamma-cystathionase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011690.1 Reference assembly

    Range
    488824..490171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002184224.1 → XP_002184260.1  cystathionine gamma-lyase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002184260.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7GAW0
    Conserved Domains (1) summary
    pfam01053
    Location:4 → 381
    Cys_Met_Meta_PP; Cys/Met metabolizm PLP-dependent enzyme
Nucleotide Protein
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