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PHATRDRAFT_41686 predicted protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7196494, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_41686
Gene description
predicted protein
Locus tag
PHATRDRAFT_41686
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_011669.1 (1279871..1281163)

Chromosome 1 - NC_011669.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011669.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
predicted protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011669.1 Reference assembly

    Range
    1279871..1281163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002176719.1 → XP_002176755.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002176755.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9SDP8, B7FPR0
    Conserved Domains (2) summary
    COG0160
    Location:5 → 429
    GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]
    cl18945
    Location:12 → 428
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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