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PHATRDRAFT_42940 predicted protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7196773, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_42940
Gene description
predicted protein
Locus tag
PHATRDRAFT_42940
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See PHATRDRAFT_42940 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_011669.1 (1578932..1583368, complement)

Chromosome 1 - NC_011669.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate synthase Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011669.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
predicted protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011669.1 Reference assembly

    Range
    1578932..1583368 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002177288.1 → XP_002177324.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002177324.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FQ34
    Conserved Domains (3) summary
    COG0553
    Location:1107 → 1242
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00079
    Location:1108 → 1227
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00176
    Location:577 → 865
    SNF2_N; SNF2 family N-terminal domain
Nucleotide Protein
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