U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PHATRDRAFT_25360 short-chain dehydrogenase/reductase acting with NAD or NADP as acceptor [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7197460, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
PHATRDRAFT_25360
Gene description
short-chain dehydrogenase/reductase acting with NAD or NADP as acceptor
Locus tag
PHATRDRAFT_25360
Gene type
protein coding
RNA name
short-chain dehydrogenase/reductase acting with NAD or NADP as acceptor
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_011670.1 (872055..873360)

Chromosome 2 - NC_011670.1Genomic Context describing neighboring genes Neighboring gene chaperone, dnaj-like protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_011670.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
short-chain dehydrogenase/reductase acting with NAD or NADP as acceptor
XP_002177706.1
  • Probably a short-chain dehydrogenase/reductase, possibly acting on ketone groups with NAD+ or NAD+ as acceptor

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011670.1 Reference assembly

    Range
    872055..873360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002177670.1 → XP_002177706.1  short-chain dehydrogenase/reductase acting with NAD or NADP as acceptor [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002177706.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9X7Q4, B7FSQ7
    Conserved Domains (2) summary
    PLN02780
    Location:21 → 320
    PLN02780; ketoreductase/ oxidoreductase
    cd05356
    Location:55 → 293
    17beta-HSD1_like_SDR_c; 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases