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hemE uroporphyrinogen decarboxylase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7198277, updated on 21-Dec-2023

Summary

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Gene symbol
hemE
Gene description
uroporphyrinogen decarboxylase
Locus tag
PHATRDRAFT_16140
Gene type
protein coding
RNA name
uroporphyrinogen decarboxylase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 23
Exon count:
1
Sequence:
Chromosome: 23; NC_011691.1 (201081..202181)

Chromosome 23 - NC_011691.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene exo-1,3-beta-glucosidase Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011691.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables uroporphyrinogen decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heme biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
uroporphyrinogen decarboxylase
XP_002184319.1
  • seventh step in heme synthesis, originaly cytosolic enzyme, which now contains putative ER signal peptide at the N terminus; putatively chloroplast targeted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011691.1 Reference assembly

    Range
    201081..202181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002184283.1 → XP_002184319.1  uroporphyrinogen decarboxylase, partial [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002184319.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7GB77
    Conserved Domains (1) summary
    PLN02433
    Location:6 → 365
    PLN02433; uroporphyrinogen decarboxylase
Nucleotide Protein
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