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PHATRDRAFT_26921 beta chain succinyl-coa synthetase synthetase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7199965, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_26921
Gene description
beta chain succinyl-coa synthetase synthetase
Locus tag
PHATRDRAFT_26921
Gene type
protein coding
RNA name
beta chain succinyl-coa synthetase synthetase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 6
Exon count:
2
Sequence:
Chromosome: 6; NC_011674.1 (836262..838014)

Chromosome 6 - NC_011674.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011674.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables succinate-CoA ligase (ADP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in succinyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of succinate-CoA ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
beta chain succinyl-coa synthetase synthetase
XP_002179303.1
  • Probable succinate-CoA ligase (GDP forming) catalyses GTP+succinate+CoA =GDP+phosphate+succinyl-CoA. Found in propanoate metabolism and the TCA cycle.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011674.1 Reference assembly

    Range
    836262..838014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179267.1 → XP_002179303.1  beta chain succinyl-coa synthetase synthetase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179303.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FXA2
    Conserved Domains (3) summary
    PLN00124
    Location:1 → 425
    PLN00124; succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
    pfam00549
    Location:300 → 420
    Ligase_CoA; CoA-ligase
    cl17255
    Location:26 → 241
    ATP-grasp_4; ATP-grasp domain
Nucleotide Protein
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