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PHATRDRAFT_19699 1-aminocyclopropane-1-carboxylate synthase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200097, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_19699
Gene description
1-aminocyclopropane-1-carboxylate synthase
Locus tag
PHATRDRAFT_19699
Gene type
protein coding
RNA name
1-aminocyclopropane-1-carboxylate synthase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_011674.1 (502366..504031)

Chromosome 6 - NC_011674.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011674.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
1-aminocyclopropane-1-carboxylate synthase
XP_002179228.1
  • Probable 1- aminocyclopropane-1-carboxylate synthase, a lyase that catalyses an alpha, gama elimination. S-adenosyl-L-methionine =1-aminocyclopropane-1-carboxylate+ methylthioadenosine

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011674.1 Reference assembly

    Range
    502366..504031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179192.1 → XP_002179228.1  1-aminocyclopropane-1-carboxylate synthase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179228.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9T849, B7FWV4
    Conserved Domains (2) summary
    cd00609
    Location:129 → 497
    AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
    PTZ00433
    Location:67 → 481
    PTZ00433; tyrosine aminotransferase; Provisional
Nucleotide Protein
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