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PHATRDRAFT_51830 methylmalonyl-coa mutase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200158, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_51830
Gene description
methylmalonyl-coa mutase
Locus tag
PHATRDRAFT_51830
Gene type
protein coding
RNA name
methylmalonyl-coa mutase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See PHATRDRAFT_51830 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Sequence:
Chromosome: 6; NC_011674.1 (774145..776381, complement)

Chromosome 6 - NC_011674.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene histone H3 isoform 1b Neighboring gene histone H4 isoform 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011674.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cobalamin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylmalonyl-CoA mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
methylmalonyl-coa mutase
XP_002179504.1
  • Probable methylmalonyl-CoA mutase catalyses (R)-methylmalonyl-CoA= succinyl-CoA requires cobamide coenzyme. Involved in valine, leucine and isoleucine degradation and Propanoate metabolism

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011674.1 Reference assembly

    Range
    774145..776381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179468.1 → XP_002179504.1  methylmalonyl-coa mutase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179504.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FX73
    Conserved Domains (3) summary
    TIGR00640
    Location:585 → 717
    acid_CoA_mut_C; methylmalonyl-CoA mutase C-terminal domain
    PRK09426
    Location:7 → 717
    PRK09426; methylmalonyl-CoA mutase; Reviewed
    cd03679
    Location:7 → 536
    MM_CoA_mutase_alpha_like; Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Alpha subunit-like subfamily; contains proteins similar to the alpha subunit of Propionbacterium shermanni MCM, as well as human and E. coli MCM. Members of this subfamily contain ...
Nucleotide Protein
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