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PHATRDRAFT_5217 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200419, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_5217
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_5217
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 7
Exon count:
2
Sequence:
Chromosome: 7; NC_011675.1 (876956..877804)

Chromosome 7 - NC_011675.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011675.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011675.1 Reference assembly

    Range
    876956..877804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179701.1 → XP_002179737.1  predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179737.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9X564, B7FYG8
    Conserved Domains (1) summary
    cl00130
    Location:1 → 216
    PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
Nucleotide Protein
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