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PHATRDRAFT_45443 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200550, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_45443
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_45443
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 7
Exon count:
2
Sequence:
Chromosome: 7; NC_011675.1 (165869..167098, complement)

Chromosome 7 - NC_011675.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011675.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to carbon dioxide IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002179805.1
  • Gene is involved in carbon utilization. EST support. Signal peptide is encoded at the 5'end of this gene. Predicted cleavage site: VDA-QE. No signs of a cTP (neg. ChoroP prediction, no cTP motif). Has high similarity to NCBI Acc. No. BAD6744.1 (New Phaeo CA). Possibly beta CA.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011675.1 Reference assembly

    Range
    165869..167098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179769.1 → XP_002179805.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179805.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FXP8, Q5W8G5
    Conserved Domains (1) summary
    cd00883
    Location:58 → 246
    beta_CA_cladeA; Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an ...
Nucleotide Protein
Heading Accession and Version

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