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PDHB1 precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200895, updated on 11-Apr-2024

Summary

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Gene symbol
PDHB1
Gene description
precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit
Locus tag
PHATRDRAFT_20183
Gene type
protein coding
RNA name
precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See PDHB1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Sequence:
Chromosome: 8; NC_011676.1 (120320..121722, complement)

Chromosome 8 - NC_011676.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011676.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyruvate dehydrogenase (acetyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process from pyruvate IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit
XP_002180179.1
  • Probably catalyzes the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011676.1 Reference assembly

    Range
    120320..121722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002180143.1 → XP_002180179.1  precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002180179.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9T1Q3, B7FZN6
    Conserved Domains (3) summary
    cd07036
    Location:34 → 200
    TPP_PYR_E1-PDHc-beta_like; Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins
    PLN02683
    Location:1 → 360
    PLN02683; pyruvate dehydrogenase E1 component subunit beta
    pfam02780
    Location:224 → 346
    Transketolase_C; Transketolase, C-terminal domain
Nucleotide Protein
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