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VDL2 precursor of protein violaxanthin deepoxidase-like protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200954, updated on 21-Dec-2023

Summary

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Gene symbol
VDL2
Gene description
precursor of protein violaxanthin deepoxidase-like protein
Locus tag
PHATRDRAFT_45846
Gene type
protein coding
RNA name
precursor of protein violaxanthin deepoxidase-like protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 8
Exon count:
2
Sequence:
Chromosome: 8; NC_011676.1 (452932..454926)

Chromosome 8 - NC_011676.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene zeaxanthin epoxidase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011676.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables violaxanthin de-epoxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xanthophyll cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
precursor of protein violaxanthin deepoxidase-like protein
XP_002180051.1
  • Violaxanthin de-epoxidase-like 2; expressed gene with violaxanthin deepoxidase domain (IPR010788), but low homology with known violaxanthin deepoxidases, possibly involved in xanthophyll cycling

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011676.1 Reference assembly

    Range
    452932..454926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002180015.1 → XP_002180051.1  precursor of protein violaxanthin deepoxidase-like protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002180051.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FYW5
    Conserved Domains (1) summary
    cl21528
    Location:26 → 455
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family
Nucleotide Protein
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