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PHATRDRAFT_12533 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7201112, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_12533
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_12533
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See PHATRDRAFT_12533 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Sequence:
Chromosome: 8; NC_011676.1 (549830..550495, complement)

Chromosome 8 - NC_011676.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene class II CPD photolyase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011676.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables isopentenyl-diphosphate delta-isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isopentenyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in isoprenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011676.1 Reference assembly

    Range
    549830..550495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002180223.1 → XP_002180259.1  predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002180259.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9S1E4, B7FZ04
    Conserved Domains (2) summary
    PLN02552
    Location:1 → 222
    PLN02552; isopentenyl-diphosphate delta-isomerase
    COG1443
    Location:10 → 222
    Idi; Isopentenyldiphosphate isomerase [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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