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Cbs hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7201255, updated on 21-Dec-2023

Summary

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Gene symbol
Cbs
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_42003
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See Cbs in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Sequence:
Chromosome: 9; NC_011677.1 (487016..488548, complement)

Chromosome 9 - NC_011677.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene homeobox protein Neighboring gene Rad51 DNA recombination/repair protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011677.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cystathionine beta-synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cysteine biosynthetic process from serine IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cysteine biosynthetic process via cystathionine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002180648.1
  • cystathionine beta-synthase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011677.1 Reference assembly

    Range
    487016..488548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002180612.1 → XP_002180648.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002180648.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G0B1
    Conserved Domains (3) summary
    cd01561
    Location:13 → 310
    CBS_like; CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. ...
    TIGR01137
    Location:4 → 460
    cysta_beta; cystathionine beta-synthase
    cl15354
    Location:348 → 459
    CBS_pair; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
Nucleotide Protein
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