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OAT ornithine aminotransferase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7201290, updated on 21-Dec-2023

Summary

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Gene symbol
OAT
Gene description
ornithine aminotransferase
Locus tag
PHATRDRAFT_27726
Gene type
protein coding
RNA name
ornithine aminotransferase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 9
Exon count:
2
Sequence:
Chromosome: 9; NC_011677.1 (655478..657275)

Chromosome 9 - NC_011677.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene fumarate hydratase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011677.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ornithine aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginine catabolic process to glutamate IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in arginine catabolic process to proline via ornithine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ornithine aminotransferase
XP_002180480.1
  • contains a predicted signal peptide

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011677.1 Reference assembly

    Range
    655478..657275
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002180444.1 → XP_002180480.1  ornithine aminotransferase [Phaeodactylum tricornutum CCAP 1055/1]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G0H9
    Conserved Domains (2) summary
    PLN02624
    Location:4 → 448
    PLN02624; ornithine-delta-aminotransferase
    TIGR00707
    Location:52 → 440
    argD; transaminase, acetylornithine/succinylornithine family
Nucleotide Protein
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