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SCS-alpha ligase succinate-coa ligase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7201458, updated on 21-Dec-2023

Summary

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Gene symbol
SCS-alpha
Gene description
ligase succinate-coa ligase
Locus tag
PHATRDRAFT_42015
Gene type
protein coding
RNA name
ligase succinate-coa ligase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 9
Exon count:
2
Sequence:
Chromosome: 9; NC_011677.1 (717119..718204, complement)

Chromosome 9 - NC_011677.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011677.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables succinate-CoA ligase (ADP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables succinate-CoA ligase (GDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of succinate-CoA ligase complex (ADP-forming) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ligase succinate-coa ligase
XP_002180696.1
  • EC 6.2.1.4: Succinyl CoA ligase alpha chain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011677.1 Reference assembly

    Range
    717119..718204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002180660.1 → XP_002180696.1  ligase succinate-coa ligase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002180696.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G0K7
    Conserved Domains (3) summary
    PTZ00187
    Location:2 → 295
    PTZ00187; succinyl-CoA synthetase alpha subunit; Provisional
    pfam02629
    Location:10 → 103
    CoA_binding; CoA binding domain
    cl22543
    Location:156 → 278
    Ligase_CoA; CoA-ligase
Nucleotide Protein
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