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TIM_1 isomerase triosephosphate isomerase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7202457, updated on 21-Dec-2023

Summary

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Gene symbol
TIM_1
Gene description
isomerase triosephosphate isomerase
Locus tag
PHATRDRAFT_54738
Gene type
protein coding
RNA name
isomerase triosephosphate isomerase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 13
Exon count:
1
Sequence:
Chromosome: 13; NC_011681.1 (595581..596584, complement)

Chromosome 13 - NC_011681.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011681.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables triose-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glyceraldehyde-3-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerol catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
isomerase triosephosphate isomerase
XP_002181761.1
  • Triosephosphate isomerase probably catalyzes D-glyceraldhyde 3-phosphate to glycerone phosphate

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011681.1 Reference assembly

    Range
    595581..596584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002181725.1 → XP_002181761.1  isomerase triosephosphate isomerase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002181761.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9T2Y1, B7G3C1
    Conserved Domains (1) summary
    PRK00042
    Location:16 → 268
    tpiA; triosephosphate isomerase; Provisional
Nucleotide Protein
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