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GapC1 glyceraldehyde-3-phosphate dehydrogenase precursor [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7203017, updated on 21-Dec-2023

Summary

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Gene symbol
GapC1
Gene description
glyceraldehyde-3-phosphate dehydrogenase precursor
Locus tag
PHATRDRAFT_22122
Gene type
protein coding
RNA name
glyceraldehyde-3-phosphate dehydrogenase precursor
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 15
Exon count:
2
Sequence:
Chromosome: 15; NC_011683.1 (748753..750258)

Chromosome 15 - NC_011683.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011683.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of endogenous promoters of GapC1 and GS for recombinant protein expression in Phaeodactylum tricornutum. Erdene-Ochir E, et al. Microbiologyopen, 2021 Oct. PMID 34713604, Free PMC Article
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
glyceraldehyde-3-phosphate dehydrogenase precursor
XP_002182291.1
  • plastidic glyceraldehyde-3-phosphate dehydrogenase, GenBank Accession AF063803

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011683.1 Reference assembly

    Range
    748753..750258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002182255.1 → XP_002182291.1  glyceraldehyde-3-phosphate dehydrogenase precursor [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002182291.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G5Q1, Q9M7R4
    Conserved Domains (3) summary
    COG0057
    Location:45 → 371
    GapA; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
    pfam00044
    Location:45 → 191
    Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
    pfam02800
    Location:196 → 353
    Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases