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PPdK hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7203153, updated on 21-Dec-2023

Summary

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Gene symbol
PPdK
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_21988
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See PPdK in Genome Data Viewer
Location:
chromosome: 15
Exon count:
2
Sequence:
Chromosome: 15; NC_011683.1 (327755..332252, complement)

Chromosome 15 - NC_011683.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011683.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyruvate, phosphate dikinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pyruvate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002182372.1
  • PEP utilizing plastid enzyme. Signal and transit peptide is predicted.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011683.1 Reference assembly

    Range
    327755..332252 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002182336.1 → XP_002182372.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002182372.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G585
    Conserved Domains (4) summary
    PRK09279
    Location:114 → 992
    PRK09279; pyruvate phosphate dikinase; Provisional
    pfam00391
    Location:531 → 614
    PEP-utilizers; PEP-utilizing enzyme, mobile domain
    pfam01326
    Location:129 → 464
    PPDK_N; Pyruvate phosphate dikinase, PEP/pyruvate binding domain
    cl21481
    Location:626 → 986
    malate_synt; Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their ...
Nucleotide Protein
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