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GapC2a glyceraldehyde-3-phosphate dehydrogenase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7203376, updated on 21-Dec-2023

Summary

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Gene symbol
GapC2a
Gene description
glyceraldehyde-3-phosphate dehydrogenase
Locus tag
PHATRDRAFT_51128
Gene type
protein coding
RNA name
glyceraldehyde-3-phosphate dehydrogenase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 16
Exon count:
2
Sequence:
Chromosome: 16; NC_011684.1 (704574..705999)

Chromosome 16 - NC_011684.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein with heme peroxidase domain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011684.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
glyceraldehyde-3-phosphate dehydrogenase
XP_002182587.1
  • cytosolic glyceraldehyde-3-phosphate dehydrogenase, GenBank Accession AF063805, recent duplication of Protein ID 51129, chr_16:730132-731560

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011684.1 Reference assembly

    Range
    704574..705999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002182551.1 → XP_002182587.1  glyceraldehyde-3-phosphate dehydrogenase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002182587.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G6K6, Q9M7R3
    Conserved Domains (3) summary
    PTZ00023
    Location:1 → 334
    PTZ00023; glyceraldehyde-3-phosphate dehydrogenase; Provisional
    pfam00044
    Location:3 → 150
    Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
    pfam02800
    Location:155 → 314
    Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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