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PHATRDRAFT_38891 predicted protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7203616, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_38891
Gene description
predicted protein
Locus tag
PHATRDRAFT_38891
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 17
Exon count:
2
Sequence:
Chromosome: 17; NC_011685.1 (467557..468760, complement)

Chromosome 17 - NC_011685.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011685.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histidinol-phosphate transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in histidine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
predicted protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011685.1 Reference assembly

    Range
    467557..468760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002182933.1 → XP_002182969.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002182969.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G747
    Conserved Domains (2) summary
    PLN03026
    Location:1 → 369
    PLN03026; histidinol-phosphate aminotransferase; Provisional
    cl18945
    Location:18 → 366
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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