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or30bw1 odorant receptor, family 30, subfamily BW, member 1 [ Danio rerio (zebrafish) ]

Gene ID: 80357, updated on 11-Apr-2024

Summary

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Official Symbol
or30bw1provided by ZNC
Official Full Name
odorant receptor, family 30, subfamily BW, member 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-010308-4
See related
Ensembl:ENSDARG00000004598 AllianceGenome:ZFIN:ZDB-GENE-010308-4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
or5.3; olfr5.3; or102-2; or15.58
Summary
Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human OR2AT4 (olfactory receptor family 2 subfamily AT member 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 15
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (31466739..31468055)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (31585998..31587314)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101883115 Neighboring gene odorant receptor, family 30, subfamily BX, member 1 Neighboring gene odorant receptor, family 30, subfamily BY, member 3 Neighboring gene odorant receptor, family 30, subfamily BY, member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Olfactory sensory axons target specific protoglomeruli in the olfactory bulb of zebrafish. Shao X, et al. Neural Dev, 2017 Oct 11. PMID 29020985, Free PMC Article
  2. Analysis and characterization of an odorant receptor gene cluster in the zebrafish genome. Dugas JC, et al. Genomics, 2001 Jan 1. PMID 11161797
  3. Family structure and phylogenetic analysis of odorant receptor genes in the large yellow croaker (Larimichthys crocea). Zhou Y, et al. BMC Evol Biol, 2011 Aug 11. PMID 21834959, Free PMC Article
  4. Molecular targets of TBBPA in zebrafish analysed through integration of genomic and proteomic approaches. De Wit M, et al. Chemosphere, 2008 Dec. PMID 18976794
  5. Positive correlation between gene coexpression and positional clustering in the zebrafish genome. Ng YK, et al. BMC Genomics, 2009 Jan 22. PMID 19159490, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables odorant binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables olfactory receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables olfactory receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in detection of chemical stimulus involved in sensory perception of smell IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within response to stimulus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sensory perception of smell IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
odorant receptor 102-2; odorant receptor, family C, subfamily 102, member 2
Names
Dr3OR15.49
odorant receptor, family 5, member 3
olfactory receptor protein 5.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131739.1 → NP_571814.1  odorant receptor 102-2

    See identical proteins and their annotated locations for NP_571814.1

    Status: PROVISIONAL

    Source sequence(s)
    AF112374
    UniProtKB/TrEMBL
    Q9I8Z6
    Related
    ENSDARP00000005012.2, ENSDART00000017810.4
    Conserved Domains (2) summary
    pfam00001
    Location:49 → 300
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:42 → 315
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    31466739..31468055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009291681.1 → XP_009289956.1  odorant receptor, family C, subfamily 102, member 2 isoform X1

    See identical proteins and their annotated locations for XP_009289956.1

    UniProtKB/TrEMBL
    A0A8M3ASR8, Q2PRB6
    Conserved Domains (1) summary
    cl21561
    Location:42 → 315
    7tm_4; Olfactory receptor
Nucleotide Protein Strain
Heading Accession and Version

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