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dacB1 penicillin-binding protein DacB [ Mycobacterium tuberculosis H37Rv ]

Gene ID: 887607, updated on 4-Apr-2024

Summary

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Gene symbol
dacB1
Gene description
penicillin-binding protein DacB
Locus tag
Rv3330
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mycobacterium tuberculosis H37Rv (strain: H37Rv, type-material: type strain of Mycobacterium tuberculosis)
Lineage
Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex
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Genomic context

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Sequence:
NC_000962.3 (3715777..3716994)

NC_000962.3Genomic Context describing neighboring genes Neighboring gene transposase fusion protein Neighboring gene ECF RNA polymerase sigma factor SigJ Neighboring gene aminotransferase Neighboring gene sugar-transport integral membrane protein SugI Neighboring gene N-acetylglucosamine-6-phosphate deacetylase NagA Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000962.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Subfamily-specific adaptations in the structures of two penicillin-binding proteins from Mycobacterium tuberculosis. Prigozhin DM, et al. PLoS One, 2014. PMID 25551456, Free PMC Article
  2. TubercuList--10 years after. Lew JM, et al. Tuberculosis (Edinb), 2011 Jan. PMID 20980199
  3. Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv. Camus JC, et al. Microbiology (Reading), 2002 Oct. PMID 12368430
  4. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Cole ST, et al. Nature, 1998 Jun 11. PMID 9634230

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Crystal structure of Rv3330 reveals strict conservation of core catalytic residues.
    Title: Subfamily-specific adaptations in the structures of two penicillin-binding proteins from Mycobacterium tuberculosis.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

General protein information

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Preferred Names
penicillin-binding protein DacB
NP_217847.1
  • D-alanyl-D-alanine carboxypeptidase) (DD-peptidase) (DD-carboxypeptidase) (PBP) (DD-transpeptidase) (serine-type D-ala-D-ala carboxypeptidase) (D-amino acid hydrolase)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000962.3 Reference assembly

    Range
    3715777..3716994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_217847.1 penicillin-binding protein DacB [Mycobacterium tuberculosis H37Rv]

    See identical proteins and their annotated locations for NP_217847.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H3LEF6
    Conserved Domains (1) summary
    COG1686
    Location:82 → 405
    DacC; D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials