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yagE putative 2-dehydro-3-deoxygluconate aldolase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944925, updated on 23-Nov-2023

Summary

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Gene symbol
yagE
Gene description
putative 2-dehydro-3-deoxygluconate aldolase
Primary source
ASAP:ABE-0000921
Locus tag
b0268
See related
ECOCYC:G6140
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0269
Summary
YagE is a predicted dihydropicolinate synthase-like protein and a member of the NAL subfamily of proteins. [More information is available at EcoCyc: G6140].
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Genomic context

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Sequence:
NC_000913.3 (282278..283186)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene orphan antitoxin YagB Neighboring gene integrase core domain-containing protein YagA Neighboring gene D-xylonate dehydratase Neighboring gene putative D-xylonate transporter YagG

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of YagE, a putative DHDPS-like protein from Escherichia coli K12. Manicka S, et al. Proteins, 2008 Jun. PMID 18361457
  2. Biosynthesis of ethylene glycol in Escherichia coli. Liu H, et al. Appl Microbiol Biotechnol, 2013 Apr. PMID 23233208
  3. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 2-dehydro-3-deoxy-D-gluconate aldolase activity IEA
Inferred from Electronic Annotation
more info
  
enables 2-dehydro-3-deoxy-D-pentonate aldolase activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within aldonic acid catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative 2-dehydro-3-deoxygluconate aldolase
NP_414802.2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    282278..283186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414802.2 putative 2-dehydro-3-deoxygluconate aldolase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414802.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P75682
    Conserved Domains (1) summary
    COG0329
    Location:3 → 290
    DapA; Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism, Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
Heading Accession and Version

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