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yagF D-xylonate dehydratase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944928, updated on 2-May-2024

Summary

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Gene symbol
yagF
Gene description
D-xylonate dehydratase
Primary source
ASAP:ABE-0000923
Locus tag
b0269
See related
ECOCYC:G6141
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0270
Summary
AFMB Structural Genomics target Number 94 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13345].
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Genomic context

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Sequence:
NC_000913.3 (283201..285168)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene integrase core domain-containing protein YagA Neighboring gene putative 2-dehydro-3-deoxygluconate aldolase Neighboring gene putative D-xylonate transporter YagG Neighboring gene putative xylosidase/arabinosidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Engineering Escherichia coli for glycolic acid production from D-xylose through the Dahms pathway and glyoxylate bypass. Cabulong RB, et al. Appl Microbiol Biotechnol, 2018 Mar. PMID 29392388
  2. High yield production of D-xylonic acid from D-xylose using engineered Escherichia coli. Liu H, et al. Bioresour Technol, 2012 Jul. PMID 21917451
  3. Isolation and characterization of Escherichia coli mutants exhibiting altered response to thymol. Shapira R, et al. Microb Drug Resist, 2007 Fall. PMID 17949301
  4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables hydro-lyase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydro-lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables xylonate dehydratase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables xylonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
  
enables xylonate dehydratase activity NAS
Non-traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within aldonic acid catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
D-xylonate dehydratase
NP_414803.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    283201..285168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414803.1 D-xylonate dehydratase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414803.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P77596
    Conserved Domains (1) summary
    PRK08211
    Location:1 → 654
    PRK08211; YjhG/YagF family D-xylonate dehydratase
Nucleotide Protein
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