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rhmD L-rhamnonate dehydratase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945881, updated on 4-Apr-2024

Summary

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Gene symbol
rhmD
Gene description
L-rhamnonate dehydratase
Primary source
ASAP:ABE-0007436
Locus tag
b2247
See related
ECOCYC:G7160
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2240; yfaW
Summary
L-rhamnonate dehydratase also dehydrates L-lyxonate, L-mannonate and D-gulonate (Rakus, 2008). [More information is available at EcoGene: EG14085]. YfaW is a L-rhamnonate dehydratase (RhamD) with promiscuous substrate specificity . [More information is available at EcoCyc: G7160].
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Genomic context

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Sequence:
NC_000913.3 (2360209..2361414, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 2-keto-3-deoxy-L-rhamnonate aldolase Neighboring gene putative transporter YfaV Neighboring gene putative DNA-binding transcriptional regulator YfaX Neighboring gene IPR008135 CinA family protein YfaY

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables L-rhamnonate dehydratase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables L-rhamnonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydro-lyase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydro-lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in amino acid catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in carbohydrate catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
L-rhamnonate dehydratase
NP_416750.2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2360209..2361414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416750.2 L-rhamnonate dehydratase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416750.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    B1IXU0, B1X8W0, C4ZU89
    UniProtKB/TrEMBL
    A0A0E1SW46, A0A1X3JEC6
    Conserved Domains (1) summary
    PRK15440
    Location:1 → 401
    PRK15440; L-rhamnonate dehydratase; Provisional
Nucleotide Protein
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Gene LinkOut

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Other Literature Sources
Molecular Biology Databases