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ydcV putative ABC transporter membrane subunit YdcV [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945903, updated on 4-Apr-2024

Summary

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Gene symbol
ydcV
Gene description
putative ABC transporter membrane subunit YdcV
Primary source
ASAP:ABE-0004809
Locus tag
b1443
See related
ECOCYC:G6754
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1437
Summary
Putative YdcVUTS ABC transport system. ydcV, potC and potI are paralogs. [More information is available at EcoGene: EG13765]. YdcV is a membrane component of a predicted spermidine/putrescine ABC transporter. [More information is available at EcoCyc: G6754].
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Genomic context

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Sequence:
NC_000913.3 (1514762..1515556)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase Neighboring gene putative ABC transporter ATP-binding protein YdcT Neighboring gene putative ABC transporter membrane subunit YdcU Neighboring gene gamma-aminobutyraldehyde dehydrogenase Neighboring gene uncharacterized protein YncL

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two different routes for double-stranded DNA transfer in natural and artificial transformation of Escherichia coli. Sun D. Biochem Biophys Res Commun, 2016 Feb 26. PMID 26826386
  2. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
  3. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
  4. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
  5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. dsDNA transfers across the two membranes through different routes in natural and artificial transformation of E. coli.
    Title: Two different routes for double-stranded DNA transfer in natural and artificial transformation of Escherichia coli.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within DNA import into cell involved in transformation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative ABC transporter membrane subunit YdcV

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1514762..1515556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415960.1 putative ABC transporter membrane subunit YdcV [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415960.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AK92, F4V1V7
    Conserved Domains (1) summary
    COG1177
    Location:5 → 258
    PotC; ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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