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ynfE putative selenate reductase YnfE [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946135, updated on 11-Apr-2024

Summary

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Gene symbol
ynfE
Gene description
putative selenate reductase YnfE
Primary source
ASAP:ABE-0005302
Locus tag
b1587
See related
ECOCYC:G6845
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1582
Summary
YnfE is highly similar to DmsA, the catalytic subunit of the dimethyl sulfoxide reductase heterotrimer, and cross-reacts with an anti-DmsA antibody. [More information is available at EcoCyc: G6845].
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Genomic context

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Sequence:
NC_000913.3 (1658069..1660495)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF06788 family lipoprotein YnfC Neighboring gene DUF1161 domain-containing protein YnfD Neighboring gene putative selenate reductase YnfF Neighboring gene putative oxidoreductase YnfG

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Activation and repression at the Escherichia coli ynfEFGHI operon promoter. Xu M, et al. J Bacteriol, 2009 May. PMID 19251855, Free PMC Article
  2. The Escherichia coli ynfEFGHI operon encodes polypeptides which are paralogues of dimethyl sulfoxide reductase (DmsABC). Lubitz SP, et al. Arch Biochem Biophys, 2003 Oct 15. PMID 14522592
  3. A genetic analysis of in vivo selenate reduction by Salmonella enterica serovar Typhimurium LT2 and Escherichia coli K12. Guymer D, et al. Arch Microbiol, 2009 Jun. PMID 19415239
  4. Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function. Kang Y, et al. J Bacteriol, 2005 Feb. PMID 15659690, Free PMC Article
  5. Differential Interactions between Tat-specific redox enzyme peptides and their chaperones. Chan CS, et al. J Bacteriol, 2009 Apr. PMID 19151138, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables dimethyl sulfoxide reductase activity IEA
Inferred from Electronic Annotation
more info
  
enables electron transfer activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molybdenum ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molybdenum ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molybdopterin cofactor binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables selenate reductase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in anaerobic respiration IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in outer membrane-bounded periplasmic space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative selenate reductase YnfE
NP_416104.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1658069..1660495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416104.1 putative selenate reductase YnfE [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416104.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7CEU3
    Conserved Domains (1) summary
    TIGR02166
    Location:10 → 808
    dmsA_ynfE; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family
Nucleotide Protein
Heading Accession and Version

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