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ydiF putative acetate-CoA transferase YdiF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946211, updated on 4-Apr-2024

Summary

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Gene symbol
ydiF
Gene description
putative acetate-CoA transferase YdiF
Primary source
ASAP:ABE-0005656
Locus tag
b1694
See related
ECOCYC:EG12432
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1692
Summary
Family I CoA transferase. [More information is available at EcoGene: EG12432]. Based on sequence similarity, YdiF is predicted to be an acetate CoA-transferase . [More information is available at EcoCyc: EG12432].
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Genomic context

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Sequence:
NC_000913.3 (1775587..1777182)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene quinate/shikimate dehydrogenase Neighboring gene 3-dehydroquinate dehydratase Neighboring gene putative acyl-CoA dehydrogenase YdiO Neighboring gene putative DNA-binding transcriptional regulator YdiP

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystallographic trapping of the glutamyl-CoA thioester intermediate of family I CoA transferases. Rangarajan ES, et al. J Biol Chem, 2005 Dec 30. PMID 16253988
  2. The overexpression and complete amino acid sequence of Escherichia coli 3-dehydroquinase. Duncan K, et al. Biochem J, 1986 Sep 1. PMID 3541912, Free PMC Article
  3. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Reed JL, et al. Genome Biol, 2003. PMID 12952533, Free PMC Article
  4. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
  5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables CoA-transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables acetate CoA-transferase activity IC
Inferred by Curator
more info
 PubMed 
enables acetate CoA-transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables acetate CoA-transferase activity ISO
Inferred from Sequence Orthology
more info
 PubMed 
enables acetate CoA-transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in ketone body catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in protein homotetramerization ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in short-chain fatty acid metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
putative acetate-CoA transferase YdiF
NP_416209.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1775587..1777182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416209.1 putative acetate-CoA transferase YdiF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416209.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A775TXC9, A0A8S7EBN3, A0A8S7JRU4, A0AA87JXG1
    Conserved Domains (1) summary
    COG4670
    Location:11 → 531
    YdiF; Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid transport and metabolism]
Nucleotide Protein
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Other Literature Sources
Molecular Biology Databases
Research Materials