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rutD putative aminoacrylate hydrolase RutD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946586, updated on 4-Apr-2024

Summary

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Gene symbol
rutD
Gene description
putative aminoacrylate hydrolase RutD
Primary source
ASAP:ABE-0003410
Locus tag
b1009
See related
ECOCYC:G6520
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1000; ycdJ
Summary
NtrC regulon. [More information is available at EcoGene: EG13856]. Escherichia coli K-12 contains a previously undescribed pathway for pyrimidine degradation. [More information is available at EcoCyc: G6520].
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Genomic context

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Sequence:
NC_000913.3 (1070965..1071765, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene FMN reductase RutF Neighboring gene putative malonic semialdehyde reductase Neighboring gene 3-aminoacrylate deaminase Neighboring gene ureidoacrylate amidohydrolase Neighboring gene pyrimidine monooxygenase RutA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A multi-faceted analysis of RutD reveals a novel family of α/β hydrolases. Knapik AA, et al. Proteins, 2012 Oct. PMID 22641504, Free PMC Article
  2. Comparative genomics reveals novel biochemical pathways. Piskur J, et al. Trends Genet, 2007 Aug. PMID 17555842
  3. A hidden metabolic pathway exposed. Osterman A. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16595627, Free PMC Article
  4. The Rut pathway for pyrimidine degradation: novel chemistry and toxicity problems. Kim KS, et al. J Bacteriol, 2010 Aug. PMID 20400551, Free PMC Article
  5. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in nitrogen utilization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nitrogen utilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in nitrogen utilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pyrimidine nucleobase catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in uracil catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within uracil catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in uracil catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
putative aminoacrylate hydrolase RutD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1070965..1071765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415529.1 putative aminoacrylate hydrolase RutD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415529.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7TWF2
    Conserved Domains (1) summary
    TIGR03611
    Location:2 → 249
    RutD; pyrimidine utilization protein D
Nucleotide Protein
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