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yjhG D-xylonate dehydratase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946829, updated on 2-May-2024

Summary

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Gene symbol
yjhG
Gene description
D-xylonate dehydratase
Primary source
ASAP:ABE-0014087
Locus tag
b4297
See related
ECOCYC:G7910
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4286
Summary
AFMB Structural Genomics target Number 93 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12549].
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Genomic context

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Sequence:
NC_000913.3 (4522127..4524094, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YjhU Neighboring gene putative transporter YjhF Neighboring gene putative 2-dehydro-3-deoxy-D-pentonate aldolase Neighboring gene putative DNA-binding transcriptional regulator YjhI

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High yield production of D-xylonic acid from D-xylose using engineered Escherichia coli. Liu H, et al. Bioresour Technol, 2012 Jul. PMID 21917451
  2. Characterization of D-xylonate dehydratase YjhG from Escherichia coli. Jiang Y, et al. Bioengineered, 2015. PMID 26083940, Free PMC Article
  3. Biosynthesis of ethylene glycol in Escherichia coli. Liu H, et al. Appl Microbiol Biotechnol, 2013 Apr. PMID 23233208
  4. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
  5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. D-xylonate dehydratase YjhG from Escherichia coli has been characterized.
    Title: Characterization of D-xylonate dehydratase YjhG from Escherichia coli.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables hydro-lyase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydro-lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables xylonate dehydratase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables xylonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
  
enables xylonate dehydratase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables xylonate dehydratase activity NAS
Non-traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within aldonic acid catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
D-xylonate dehydratase
NP_418717.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4522127..4524094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418717.1 D-xylonate dehydratase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418717.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5C9AK74
    Conserved Domains (1) summary
    PRK08211
    Location:1 → 655
    PRK08211; YjhG/YagF family D-xylonate dehydratase
Nucleotide Protein
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