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idnO 5-keto-D-gluconate 5-reductase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947109, updated on 11-Apr-2024

Summary

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Gene symbol
idnO
Gene description
5-keto-D-gluconate 5-reductase
Primary source
ASAP:ABE-0013971
Locus tag
b4266
See related
ECOCYC:G7892
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4259; yjgU
Summary
The subunit structure of 5-keto-D-gluconate 5-reductase has not been determined. [More information is available at EcoCyc: G7892].
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Genomic context

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Sequence:
NC_000913.3 (4492587..4493351, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator IdnR Neighboring gene L-idonate/5-ketogluconate/gluconate transporter Neighboring gene L-idonate 5-dehydrogenase Neighboring gene D-gluconate kinase, thermosensitive

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of the yqhE and yafB genes encoding two 2, 5-diketo-D-gluconate reductases in Escherichia coli. Yum DY, et al. Appl Environ Microbiol, 1999 Aug. PMID 10427017, Free PMC Article
  2. Transcriptional organization and regulation of the L-idonic acid pathway (GntII system) in Escherichia coli. Bausch C, et al. J Bacteriol, 2004 Mar. PMID 14973046, Free PMC Article
  3. Sequence analysis of the GntII (subsidiary) system for gluconate metabolism reveals a novel pathway for L-idonic acid catabolism in Escherichia coli. Bausch C, et al. J Bacteriol, 1998 Jul. PMID 9658018, Free PMC Article
  4. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Reed JL, et al. Genome Biol, 2003. PMID 12952533, Free PMC Article
  5. What's for dinner?: Entner-Doudoroff metabolism in Escherichia coli. Peekhaus N, et al. J Bacteriol, 1998 Jul. PMID 9657988, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables gluconate 5-dehydrogenase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables gluconate 5-dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-idonate catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within L-idonate catabolic process IEP
Inferred from Expression Pattern
more info
 PubMed 

General protein information

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Preferred Names
5-keto-D-gluconate 5-reductase
NP_418687.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4492587..4493351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418687.1 5-keto-D-gluconate 5-reductase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418687.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AQC3
    Conserved Domains (1) summary
    PRK08085
    Location:1 → 254
    PRK08085; gluconate 5-dehydrogenase; Provisional
Nucleotide Protein
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