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araA L-arabinose isomerase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947511, updated on 2-May-2024

Summary

Gene symbol
araA
Gene description
L-arabinose isomerase
Primary source
ASAP:ABE-0000221
Locus tag
b0062
See related
ECOCYC:EG10052
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0063
Summary
L-arabinose isomerase catalyzes the first step in the degradation of L-arabinose, its isomerization to L-ribulose. [More information is available at EcoCyc: EG10052].
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Genomic context

Sequence:
NC_000913.3 (66835..68337, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA polymerase II Neighboring gene L-ribulose-5-phosphate 4-epimerase AraD Neighboring gene ribulokinase Neighboring gene DNA-binding transcriptional dual regulator AraC

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables L-arabinose isomerase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables L-arabinose isomerase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables L-arabinose isomerase activity IEA
Inferred from Electronic Annotation
more info
 
enables L-arabinose isomerase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
L-arabinose isomerase
NP_414604.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    66835..68337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414604.1 L-arabinose isomerase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414604.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7YCX7
    Conserved Domains (1) summary
    PRK02929
    Location:1500
    PRK02929; L-arabinose isomerase; Provisional