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xylF xylose ABC transporter periplasmic binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948090, updated on 11-Apr-2024

Summary

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Gene symbol
xylF
Gene description
xylose ABC transporter periplasmic binding protein
Primary source
ASAP:ABE-0011646
Locus tag
b3566
See related
ECOCYC:EG20252
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3555; xylT
Summary
XylF is the periplasmic binding component of the XylFGH xylose ABC transporter. [More information is available at EcoCyc: EG20252].
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Genomic context

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Sequence:
NC_000913.3 (3731131..3732123)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene xylulokinase Neighboring gene ncRNA Neighboring gene xylose isomerase Neighboring gene xylose ABC transporter ATP binding subunit Neighboring gene xylose ABC transporter membrane subunit Neighboring gene DNA-binding transcriptional dual regulator XylR

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Purification and properties of a periplasmic D-xylose-binding protein from Escherichia coli K-12. Ahlem C, et al. J Biol Chem, 1982 Mar 25. PMID 7037773
  2. Location of a structural gene for xylose-H+ symport at 91 min on the linkage map of Escherichia coli K12. Davis EO, et al. J Biol Chem, 1984 Feb 10. PMID 6363412
  3. Utilization of D-ribose through D-xylose transporter. Song S, et al. FEMS Microbiol Lett, 1998 Jun 15. PMID 9673030
  4. Sugar transporters in efficient utilization of mixed sugar substrates: current knowledge and outlook. Jojima T, et al. Appl Microbiol Biotechnol, 2010 Jan. PMID 19838697
  5. Cloning and characterization of the xyl genes from Escherichia coli. Rosenfeld SA, et al. Mol Gen Genet, 1984. PMID 6330500

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on mature peptide
    Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables carbohydrate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables monosaccharide binding IEA
Inferred from Electronic Annotation
more info
  
enables monosaccharide binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables monosaccharide binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within D-xylose metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in D-xylose transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within D-xylose transmembrane transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in D-xylose transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in organic substance transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
is_active_in outer membrane-bounded periplasmic space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IEA
Inferred from Electronic Annotation
more info
  
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
xylose ABC transporter periplasmic binding protein
NP_418023.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3731131..3732123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418023.1 xylose ABC transporter periplasmic binding protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418023.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2W6RDG5, A0A8S7ILG0
    Conserved Domains (1) summary
    PRK10355
    Location:1 → 330
    xylF; D-xylose ABC transporter substrate-binding protein
Nucleotide Protein
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