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rhaB rhamnulokinase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948399, updated on 4-Apr-2024

Summary

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Gene symbol
rhaB
Gene description
rhamnulokinase
Primary source
ASAP:ABE-0012738
Locus tag
b3904
See related
ECOCYC:EG11868
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3897
Summary
L-rhamnulose kinase catalyzes the second step of rhamnose degradation, the phosphorylation of rhamnulose. [More information is available at EcoCyc: EG11868].
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Genomic context

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Sequence:
NC_000913.3 (4095979..4097448, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene L-rhamnose mutarotase Neighboring gene rhamnulose-1-phosphate aldolase Neighboring gene L-rhamnose isomerase Neighboring gene DNA-binding transcriptional activator RhaS Neighboring gene DNA-binding transcriptional activator RhaR Neighboring gene rhamnose/lyxose:H(+) symporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substrate spectrum of L-rhamnulose kinase related to models derived from two ternary complex structures. Grueninger D, et al. FEBS Lett, 2007 Jun 26. PMID 17568582
  2. Structure and reaction mechanism of L-rhamnulose kinase from Escherichia coli. Grueninger D, et al. J Mol Biol, 2006 Jun 9. PMID 16674975
  3. THE PURIFICATION AND PROPERTIES OF L-RHAMNULOKINASE. CHIU TH, et al. Biochim Biophys Acta, 1964 Dec 23. PMID 14264882
  4. THE METABOLISM OF L-RHAMNOSE IN ESCHERICHIA COLI. II. L-RHAMNULOSE KINASE. TAKAGI Y, et al. Biochim Biophys Acta, 1964 Oct 23. PMID 14243778
  5. Metabolism of L-rhamnose by Escherichia coli. II. The phosphorylation of L-rhamnulose. WILSON DM, et al. J Bacteriol, 1957 Mar. PMID 13416205, Free PMC Article

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The structure of rhaB in a ternary complex with its substrates ADP and L-rhamnulose has been determined at 1.55A resolution.
    Title: Substrate spectrum of L-rhamnulose kinase related to models derived from two ternary complex structures.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ATP binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables glycerol kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables rhamnulokinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables rhamnulokinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in carbohydrate phosphorylation IEA
Inferred from Electronic Annotation
more info
  
involved_in glycerol metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
  
involved_in rhamnose catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in rhamnose catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in rhamnose catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within rhamnose catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in rhamnose metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
rhamnulokinase
NP_418340.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4095979..4097448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418340.1 rhamnulokinase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418340.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7EJ15
    Conserved Domains (1) summary
    PRK10640
    Location:19 → 489
    rhaB; rhamnulokinase; Provisional
Nucleotide Protein
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Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials