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yjhH putative 2-dehydro-3-deoxy-D-pentonate aldolase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948825, updated on 4-Apr-2024

Summary

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Gene symbol
yjhH
Gene description
putative 2-dehydro-3-deoxy-D-pentonate aldolase
Primary source
ASAP:ABE-0014089
Locus tag
b4298
See related
ECOCYC:G7911
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4287
Summary
AFMB Structural Genomics target Number 50 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12550].
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Genomic context

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Sequence:
NC_000913.3 (4524105..4525010, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YjhF Neighboring gene D-xylonate dehydratase Neighboring gene putative DNA-binding transcriptional regulator YjhI Neighboring gene putative DNA-binding transcriptional regulator SgcR

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA. Salmon KA, et al. J Biol Chem, 2005 Apr 15. PMID 15699038
  2. Biosynthesis of ethylene glycol in Escherichia coli. Liu H, et al. Appl Microbiol Biotechnol, 2013 Apr. PMID 23233208
  3. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 2-dehydro-3-deoxy-D-pentonate aldolase activity IEA
Inferred from Electronic Annotation
more info
  
enables 2-dehydro-3-deoxy-D-pentonate aldolase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within aldonic acid catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative 2-dehydro-3-deoxy-D-pentonate aldolase
NP_418718.4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4524105..4525010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418718.4 putative 2-dehydro-3-deoxy-D-pentonate aldolase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418718.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0J8Y3K4, A0A0M4IJ90, E1IYM4
    Conserved Domains (1) summary
    pfam00701
    Location:3 → 296
    DHDPS; Dihydrodipicolinate synthetase family
Nucleotide Protein
Heading Accession and Version

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