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dgcP diguanylate cyclase DgcP [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948969, updated on 2-May-2024

Summary

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Gene symbol
dgcP
Gene description
diguanylate cyclase DgcP
Primary source
ASAP:ABE-0005972
Locus tag
b1794
See related
ECOCYC:G6980
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1792; yeaP
Summary
YeaP has diguanylate cyclase activity in vitro (Ryjenkov, 2005). [More information is available at EcoGene: EG13502]. YeaP is a GGDEF domain-containing protein that has diguanylate cyclase activity . [More information is available at EcoCyc: G6980].
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Genomic context

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Sequence:
NC_000913.3 (1877715..1878740)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF488 domain-containing protein YeaO Neighboring gene DUF333 domain-containing lipoprotein YoaF Neighboring gene putative membrane protein YoaK Neighboring gene uncharacterized protein YoaJ

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacterial nucleotide-based second messengers. Pesavento C, et al. Curr Opin Microbiol, 2009 Apr. PMID 19318291
  2. Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: insights into biochemistry of the GGDEF protein domain. Ryjenkov DA, et al. J Bacteriol, 2005 Mar. PMID 15716451, Free PMC Article
  3. C-di-GMP: the dawning of a novel bacterial signalling system. Römling U, et al. Mol Microbiol, 2005 Aug. PMID 16045609
  4. Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli. Sommerfeldt N, et al. Microbiology (Reading), 2009 Apr. PMID 19332833
  5. Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae. Römling U. Cell Mol Life Sci, 2005 Jun. PMID 15818467

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables diguanylate cyclase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables diguanylate cyclase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables diguanylate cyclase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell adhesion involved in single-species biofilm formation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of bacterial-type flagellum-dependent cell motility IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
diguanylate cyclase DgcP
NP_416308.4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1877715..1878740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416308.4 diguanylate cyclase DgcP [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416308.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5P0JFH7
    Conserved Domains (2) summary
    smart00065
    Location:19 → 164
    GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
    pfam00990
    Location:174 → 329
    GGDEF; Diguanylate cyclase, GGDEF domain
Nucleotide Protein
Heading Accession and Version

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