URL: https://github.com/GregoryFaust/samblaster
Proper Citation: SAMBLASTER (RRID:SCR_000468)
Description: Software tool to mark duplicates and extract discordant and split reads from SAM files. This fast and flexible program for marking duplicates in read-id grouped paired-end SAM files can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.
Resource Type: software resource
Defining Citation: PMID:24812344, DOI:10.1093/bioinformatics/btu314
Keywords: standalone software, c++, bio.tools
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