URL: http://htslib.org/
Proper Citation: SAMTOOLS (RRID:SCR_002105)
Description: Original SAMTOOLS package has been split into three separate repositories including Samtools, BCFtools and HTSlib. Samtools for manipulating next generation sequencing data used for reading, writing, editing, indexing,viewing nucleotide alignments in SAM,BAM,CRAM format. BCFtools used for reading, writing BCF2,VCF, gVCF files and calling, filtering, summarising SNP and short indel sequence variants. HTSlib used for reading, writing high throughput sequencing data.
Abbreviations: SAMtools
Synonyms: samtools, Samtools, Sequence Alignment Map TOOLS, SAMtools, SAM tools
Resource Type: sequence analysis software, data processing software, software toolkit, software resource, software application, data analysis software
Defining Citation: PMID:19505943, PMID:21903627, DOI:10.1093/bioinformatics/btp352
Keywords: Samtools, BCFtools, HTSlib, next generation sequencing, nucleotide alignments, sequence variant, genomic, c, perl, read, alignment, nucleotide, sequence, data, process, sam, bam, cram, vcf, bcf, bio.tools
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