URL: https://github.com/gt1/biobambam
Proper Citation: biobambam (RRID:SCR_003308)
Description: Software tools for read pair collation based algorithms on BAM files including * bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name * bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field * bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column * bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. * bamsort: reads BAM and writes BAM resorted by coordinates or query name * bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
Resource Type: software resource, data processing software, software application
Defining Citation: DOI:10.1186/1751-0473-9-13
Keywords: standalone software, bio.tools
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